RNA-seq profiling of human sorted mixed immune cells (MIC), mixed epithelial cells (EPI), mixed endothelial cells (END) and mixed mesenchymal cells (MES) from combined right upper and right middle lobes or, in the case of the adult lung, the right middle lobe
Gloria Pryhuber1*
1University of Rochester Medical Center, *Corresponding author
Description
RNA-seq profiling of human sorted mixed immune cells (MIC), mixed epithelial cells (EPI), mixed endothelial cells (END) and mixed mesenchymal cells (MES) from combined right upper and right middle lobes or, in the case of the adult lung, the right middle lobe
LungMAP ID: LMEX0000003691
Organism: human
Stages: neonate | infant | child | adult
Assay type: RNA-seq
Technology:
Reference:
| LungMAP ID | Alt ID | Species | Sex | Race | Age | Age Group | GA at Birth | CGA | Weight | Weight Percentile | Cause of Death | Type of Death | Health Status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LMSP0000000131 | D008 | Homo sapiens | Female | White | 20 months | Child | 12.25 kg | 85 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000134 | D011 | Homo sapiens | Female | White | 20 months | Child | 10.89 kg | 54 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | ||
| LMSP0000000141 | D018 | Homo sapiens | Female | White | 3 years | Child | 15 kg | 54 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | ||
| LMSP0000000142 | D019 | Homo sapiens | Male | White | 1 day | Neonate | 37 weeks, 3 days | 37.43 weeks | kg | 0 | Congenital Anomaly | DCD (circulatory death) | No known lung disease |
| LMSP0000000145 | D022 | Homo sapiens | Male | Other | 2 years | Child | 11.79 kg | 10 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000035 | D024 | Homo sapiens | Male | Other | 4 months | Infant | 8.62 kg | 94 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000152 | D031 | Homo sapiens | Male | White | 7 months | Infant | 7.26 kg | 8.2 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | ||
| LMSP0000000157 | D036 | Homo sapiens | Male | White | 8 years | Child | 34 kg | 89 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000159 | D038 | Homo sapiens | Female | Unknown or Not Reported | 1 day | Neonate | 39 weeks, 3 days | 39.86 weeks | 2.27 kg | 1.2 | Congenital Anomaly | DCD (circulatory death) | No known lung disease |
| LMSP0000000162 | D041 | Homo sapiens | Male | Unknown or Not Reported | 6 days | Neonate | 38 weeks, 3 days | 39.57 weeks | 3.24 kg | 31 | Anoxic/Hypoxic Brain Injury | DCD (circulatory death) | No known lung disease |
| LMSP0000000164 | D043 | Homo sapiens | Male | White | 21 months | Child | 9.8 kg | 6.3 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000165 | D044 | Homo sapiens | Male | White | 6 days | Neonate | 40 weeks, 3 days | 41.72 weeks | 3.63 kg | 58 | Anoxic/Hypoxic Brain Injury | DCD (circulatory death) | No known lung disease |
| LMSP0000000177 | D056 | Homo sapiens | Male | White | 5 years | Child | 22.23 kg | 82 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000184 | D063 | Homo sapiens | Male | African American | 16 months | Child | 11.2 kg | 62 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000000192 | D071 | Homo sapiens | Male | White | 24 years | Adult | 90 kg | 0 | Other | DCD (circulatory death) | No known lung disease | ||
| LMSP0000000196 | D075 | Homo sapiens | Male | White | 4 months | Infant | 6.8 kg | 28 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | ||
| LMSP0000000213 | D092 | Homo sapiens | Female | African American | 2 months | Infant | 40 weeks, 3 days | 5 kg | 23 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | |
| LMSP0000001012 | D105 | Homo sapiens | Female | Unknown or Not Reported | 6 months | Infant | 8.7 | 89 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000001017 | D110 | Homo sapiens | Male | Unknown or Not Reported | 3 months | Infant | 40 weeks, 3 days | 58.14 weeks | 7.71 | 70 | Trauma | DBD (after brain death) | No known lung disease |
| LMSP0000001020 | D113 | Homo sapiens | Male | African American | 5 months | Infant | 8.3 | 58 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000001023 | D116 | Homo sapiens | Female | African American | 40 years | Adult | 88 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | |||
| LMSP0000001026 | D119 | Homo sapiens | Male | White | 13 months | Child | 11.7 | 93 | Other | DBD (after brain death) | No known lung disease | ||
| LMSP0000001040 | D133 | Homo sapiens | Male | African American | 11 months | Infant | 40 weeks, 3 days | 10.43 | 80 | Trauma | DBD (after brain death) | No known lung disease | |
| LMSP0000001041 | D134 | Homo sapiens | Female | White | 8 years | Child | 27.5 | 52 | Trauma | DBD (after brain death) | No known lung disease | ||
| LMSP0000001043 | D136 | Homo sapiens | Male | Unknown or Not Reported | 16 months | Child | 8.7 | 3.6 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease | ||
| LMSP0000001050 | D143 | Homo sapiens | Male | African American | 3 months | Infant | 6.35 | 68 | Anoxic/Hypoxic Brain Injury | DBD (after brain death) | No known lung disease |
| File | Description | Size |
|---|---|---|
| Cell Sorting Results | Cell sorting results | 157.6 KB |
| Data Table (Normalized Counts) | Normalized counts output from deSeq2 (CPM) | 26.8 MB |
| Data Table (Raw Counts) | Raw counts generated using STAR aligner on gencode 28. See report in RNA Extraction for further details in data processing | 5.8 MB |
| RNA QC | RNA QC (Bioanalyzer results including RIN and concentration) | 20.8 KB |
| RNA-seq QC | RNA-seq QC (GRC post read processing results) | 5.8 MB |
| Sample Metadata | Sample Metadata | 24.8 KB |