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Publications

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DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data.
DePasquale EAK, Schnell DJ, Van Camp PJ, Valiente-Alandí Í, Blaxall BC, Grimes HL, Singh H, Salomonis N
Cell reports, 11 2019
Disruption of normal patterns of FOXF1 expression in a lethal disorder of lung development.
Steiner LA, Getman M, Schiralli Lester GM, Iqbal MA, Katzman P, Szafranski P, Stankiewicz P, Bhattacharya S, Mariani T, Pryhuber G, Lin X, Young JL, Dean DA, Scheible K
Journal of medical genetics, 05 2020
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung.
Pan H, Deutsch GH, Wert SE, ,
Journal of biomedical semantics, 10 2019
Transcriptional regulatory model of fibrosis progression in the human lung.
McDonough JE, Ahangari F, Li Q, Jain S, Verleden SE, Herazo-Maya J, Vukmirovic M, DeIuliis G, Tzouvelekis A, Tanabe N, Chu F, Yan X, Verschakelen J, Homer RJ, Manatakis DV, Zhang J, Ding J, Maes K, De Sadeleer L, Vos R, Neyrinck A, Benos PV, Bar-Joseph Z, Tantin D, Hogg JC, Vanaudenaerde BM, Wuyts WA, Kaminski N
JCI insight, 11 2019
cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes.
DePasquale EAK, Schnell D, Dexheimer P, Ferchen K, Hay S, Chetal K, Valiente-Alandí Í, Blaxall BC, Grimes HL, Salomonis N
Nucleic acids research, 12 2019
YAP and TAZ in Lung Development: The Timing Is Important.
Warburton D
American journal of respiratory cell and molecular biology, 02 2020
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.
Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y
Analytical chemistry, 10 2019
Integrating multiomics longitudinal data to reconstruct networks underlying lung development.
Ding J, Ahangari F, Espinoza CR, Chhabra D, Nicola T, Yan X, Lal CV, Hagood JS, Kaminski N, Bar-Joseph Z, Ambalavanan N
American journal of physiology. Lung cellular and molecular physiology, 11 2019
Toward Early Detection of Idiopathic Pulmonary Fibrosis.
Schupp JC, Kaminski N
American journal of respiratory and critical care medicine, 12 2019
Lipid Coverage in Nanospray Desorption Electrospray Ionization Mass Spectrometry Imaging of Mouse Lung Tissues.
Nguyen SN, Kyle JE, Dautel SE, Sontag R, Luders T, Corley R, Ansong C, Carson J, Laskin J
Analytical chemistry, 09 2019
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