Publications

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A transcription factor hierarchy defines an environmental stress response network. Song L, Huang SC, Wise A, Castanon R, Nery JR, Chen H, Watanabe M, Thomas J, Bar-Joseph Z, Ecker JR Science (New York, N.Y.), 11 2016 Searching for better animal models of BPD: a perspective. Ambalavanan N, Morty RE American journal of physiology. Lung cellular and molecular physiology, Nov 2016 Inhibition of Regulatory-Associated Protein of Mechanistic Target of Rapamycin Prevents Hyperoxia-Induced Lung Injury by Enhancing Autophagy and Reducing Apoptosis in Neonatal Mice. Sureshbabu A, Syed M, Das P, Janér C, Pryhuber G, Rahman A, Andersson S, Homer RJ, Bhandari V American journal of respiratory cell and molecular biology, Nov 2016 SH2 Domain-Containing Phosphatase-2 Is a Novel Antifibrotic Regulator in Pulmonary Fibrosis. Tzouvelekis A, Yu G, Lino Cardenas CL, Herazo-Maya JD, Wang R, Woolard T, Zhang Y, Sakamoto K, Lee H, Yi JS, DeIuliis G, Xylourgidis N, Ahangari F, Lee PJ, Aidinis V, Herzog EL, Homer R, Bennett AM, Kaminski N American journal of respiratory and critical care medicine, Feb 2017 The Airway Microbiome at Birth. Lal CV, Travers C, Aghai ZH, Eipers P, Jilling T, Halloran B, Carlo WA, Keeley J, Rezonzew G, Kumar R, Morrow C, Bhandari V, Ambalavanan N Scientific reports, Aug 2016 Acute Kidney Injury Urine Biomarkers in Very Low-Birth-Weight Infants. Askenazi DJ, Koralkar R, Patil N, Halloran B, Ambalavanan N, Griffin R Clinical journal of the American Society of Nephrology : CJASN, Sep 2016 Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments. Sefer E, Kleyman M, Bar-Joseph Z Cell systems, Jul 2016 Flow-based sorting of neonatal lymphocyte populations for transcriptomics analysis. Misra RS, Bhattacharya S, Huyck HL, Wang JC, Slaunwhite CG, Slaunwhite SL, Wightman TR, Secor-Socha S, Misra SK, Bushnell TP, Reynolds AM, Ryan RM, Quataert SA, Pryhuber GS, Mariani TJ Journal of immunological methods, Oct 2016 Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification. Kochen MA, Chambers MC, Holman JD, Nesvizhskii AI, Weintraub ST, Belisle JT, Islam MN, Griss J, Tabb DL Analytical chemistry, Jun 2016 Hyperoxia Induces Intracellular Acidification in Neonatal Mouse Lung Fibroblasts: Real-Time Investigation Using Plasmonically Enhanced Raman Spectroscopy. Panikkanvalappil SR, James M, Hira SM, Mobley J, Jilling T, Ambalavanan N, El-Sayed MA Journal of the American Chemical Society, Mar 2016