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Publications

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cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes.
DePasquale EAK, Schnell D, Dexheimer P, Ferchen K, Hay S, Chetal K, Valiente-Alandí Í, Blaxall BC, Grimes HL, Salomonis N
Nucleic acids research, 12 2019
YAP and TAZ in Lung Development: The Timing Is Important.
Warburton D
American journal of respiratory cell and molecular biology, 02 2020
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.
Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y
Analytical chemistry, 10 2019
Integrating multiomics longitudinal data to reconstruct networks underlying lung development.
Ding J, Ahangari F, Espinoza CR, Chhabra D, Nicola T, Yan X, Lal CV, Hagood JS, Kaminski N, Bar-Joseph Z, Ambalavanan N
American journal of physiology. Lung cellular and molecular physiology, 11 2019
Lipid Coverage in Nanospray Desorption Electrospray Ionization Mass Spectrometry Imaging of Mouse Lung Tissues.
Nguyen SN, Kyle JE, Dautel SE, Sontag R, Luders T, Corley R, Ansong C, Carson J, Laskin J
Analytical chemistry, 09 2019
Plasma mitochondrial DNA is associated with extrapulmonary sarcoidosis.
Ryu C, Brandsdorfer C, Adams T, Hu B, Kelleher DW, Yaggi M, Manning EP, Walia A, Reeves B, Pan H, Winkler J, Minasyan M, Dela Cruz CS, Kaminski N, Gulati M, Herzog EL
The European respiratory journal, 08 2019
Loss of FLCN inhibits canonical WNT signaling via TFE3.
Kennedy JC, Khabibullin D, Hougard T, Nijmeh J, Shi W, Henske EP
Human molecular genetics, 10 2019
Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung.
Du Y, Clair GC, Al Alam D, Danopoulos S, Schnell D, Kitzmiller JA, Misra RS, Bhattacharya S, Warburton D, Mariani TJ, Pryhuber GS, Whitsett JA, Ansong C, Xu Y
American journal of physiology. Lung cellular and molecular physiology, 09 2019
Dnmt1 is required for proximal-distal patterning of the lung endoderm and for restraining alveolar type 2 cell fate.
Liberti DC, Zepp JA, Bartoni CA, Liberti KH, Zhou S, Lu M, Morley MP, Morrisey EE
Developmental biology, 10 2019
Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT Endothelial Progenitor Cells.
Ren X, Ustiyan V, Guo M, Wang G, Bolte C, Zhang Y, Xu Y, Whitsett JA, Kalin TV, Kalinichenko VV
American journal of respiratory and critical care medicine, 11 2019
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