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Publications

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The past and future of genetics in pulmonary disease: You can teach an old dog new tricks.
Nogee LM, Hamvas A
Pediatric pulmonology, Jul 2020
Glucocorticoid Regulates Mesenchymal Cell Differentiation Required for Perinatal Lung Morphogenesis and Function.
Bridges JP, Sudha P, Lipps D, Wagner A, Guo M, Du Y, Brown K, Filuta A, Kitzmiller JA, Stockman C, Chen X, Weirauch MT, Jobe AH, Whitsett JA, Xu Y
American journal of physiology. Lung cellular and molecular physiology, May 2020
The elephant in the lung: Integrating lineage-tracing, molecular markers, and single cell sequencing data to identify distinct fibroblast populations during lung development and regeneration.
Riccetti M, Gokey JJ, Aronow B, Perl AT
Matrix biology : journal of the International Society for Matrix Biology, May 2020
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors.
Slyper M, Porter CBM, Ashenberg O, Waldman J, Drokhlyansky E, Wakiro I, Smillie C, Smith-Rosario G, Wu J, Dionne D, Vigneau S, Jané-Valbuena J, Tickle TL, Napolitano S, Su MJ, Patel AG, Karlstrom A, Gritsch S, Nomura M, Waghray A, Gohil SH, Tsankov AM, Jerby-Arnon L, Cohen O, Klughammer J, Rosen Y, Gould J, Nguyen L, Hofree M, Tramontozzi PJ, Li B, Wu CJ, Izar B, Haq R, Hodi FS, Yoon CH, Hata AN, Baker SJ, Suvà ML, Bueno R, Stover EH, Clay MR, Dyer MA, Collins NB, Matulonis UA, Wagle N, Johnson BE, Rotem A, Rozenblatt-Rosen O, Regev A
Nature medicine, May 2020
Efficient Generation and Transcriptomic Profiling of Human iPSC-Derived Pulmonary Neuroendocrine Cells.
Hor P, Punj V, Calvert BA, Castaldi A, Miller AJ, Carraro G, Stripp BR, Brody SL, Spence JR, Ichida JK, Ryan Firth AL, Borok Z
iScience, May 2020
Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis.
Tsukui T, Sun KH, Wetter JB, Wilson-Kanamori JR, Hazelwood LA, Henderson NC, Adams TS, Schupp JC, Poli SD, Rosas IO, Kaminski N, Matthay MA, Wolters PJ, Sheppard D
Nature communications, Apr 2020
The Cellular and Physiological Basis for Lung Repair and Regeneration: Past, Present, and Future.
Basil MC, Katzen J, Engler AE, Guo M, Herriges MJ, Kathiriya JJ, Windmueller R, Ysasi AB, Zacharias WJ, Chapman HA, Kotton DN, Rock JR, Snoeck HW, Vunjak-Novakovic G, Whitsett JA, Morrisey EE
Cell stem cell, Apr 2020
Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF.
Venkatasubramanian M, Chetal K, Schnell DJ, Atluri G, Salomonis N
Bioinformatics (Oxford, England), Jun 2020
Functional characterization of four ATP-binding cassette transporter A3 gene (ABCA3) variants.
Hu JY, Yang P, Wegner DJ, Heins HB, Luke CJ, Li F, White FV, Silverman GA, Sessions Cole F, Wambach JA
Human mutation, Jul 2020
Direct Comparison of Mononucleated and Binucleated Cardiomyocytes Reveals Molecular Mechanisms Underlying Distinct Proliferative Competencies.
Windmueller R, Leach JP, Babu A, Zhou S, Morley MP, Wakabayashi A, Petrenko NB, Viatour P, Morrisey EE
Cell reports, Mar 2020
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